docs: add AGENTS.md with dev workflow conventions

.stow-local-ignore

@@ -1,3 +1,2 @@
 archive/
 scripts/
-secrets/

AGENTS.md

@@ -0,0 +1,12 @@
+# AGENTS.md
+
+Personal development conventions — applies to all projects unless overridden by a project-level AGENTS.md.
+
+## Workflow
+
+- New feature → clean branch from `origin/master` → push → PR on Gitea
+- Branch naming: `feat/description` (features), `fix/description` (bugs/docs/docs/chores)
+- Always branch from `origin/master`, never from another feature branch
+- PR title describes the change; body explains motivation + summary
+- After PR merge, delete the feature branch
+- Always validate before push (build, lint, test)

Makefile

@@ -1,40 +1,37 @@
 # Define list of directories you want to stow
-CONFIG_DIRS := btop doom hypr kitty exokortex nvim rclone starship tmux wallpapers waybar wireplumber wofi yazi zsh
+CONFIG_DIRS := btop doom hypr kitty nvim rclone starship tmux wallpapers waybar wireplumber wofi yazi zsh
 
-# Default target for a fully-equipped workstation
-all: stow_all stow_rclone stow_exokortex
+all: stow_all
 	wal -i ~/.config/wallpapers/green_yellow_forest.jpg -o ~/.config/waybar/launch.sh
-	fastfetch
+	neofetch
 
-# Base configurations common to ALL hosts (excludes host-specific network/system automation)
-stow_all: $(filter-out rclone exokortex, $(CONFIG_DIRS))
-	@echo "Removing legacy shell symlinks if they exist..."
+# Main target to handle stowing for all directories except rclone
+stow_all: $(filter-out rclone, $(CONFIG_DIRS))
+	@echo "Cleaning broken symlinks in ~/.config..."
+	find ~/.config -xtype l -delete -print
+	@echo "Removing symlink ~/.zshrc if it exists..."
 	@if [ -L $$HOME/.zshrc ]; then rm $$HOME/.zshrc; fi
+	@echo "Removing symlink ~/.tmux.conf if it exists..."
 	@if [ -L $$HOME/.tmux.conf ]; then rm $$HOME/.tmux.conf; fi
-	@echo "Stowing baseline configurations..."
-	@$(foreach dir,$(filter-out rclone exokortex, $(CONFIG_DIRS)), $(MAKE) stow_$(dir);)
+	@echo "Stowing all configurations except rclone..."
+	@$(foreach dir,$(filter-out rclone, $(CONFIG_DIRS)), $(MAKE) stow_$(dir);)
 
-# Generic atomic stow command using Restow (-R) for clean tracking
+# Generic stow command for user-scoped directories
 stow_%:
-	@echo "Stowing package: $*"
-	stow -R -v -t $(HOME) $*
+	@echo "Stowing $*"
+	stow -v -t $(HOME) $*
 
-# Dedicated target for rclone (Omit this target on hosts that don't need it)
-stow_rclone:
-	@echo "Stowing rclone securely..."
-	stow -R -v -t $(HOME) rclone
+# Post-installation script for rclone (executed after stowing)
+post_install_rclone:
 	@echo "Running post-installation script for rclone"
 	@bash $(CURDIR)/scripts/rclone_post_install.sh
 
-# Dedicated target for exokortex (Omit this target on sterile servers if needed)
-stow_exokortex:
-	@echo "Stowing exokortex automation layers..."
-	stow -R -v -t $(HOME) exokortex
-	@echo "Running post-installation script for exokortex"
-	@bash $(CURDIR)/scripts/exokortex_post_install.sh
-
-# Optional: Global cleanup target you only run manually when you want a deep system purge
-prune_dead_links:
-	@echo "Purging all broken symlinks across core configuration profiles..."
-	find ~/.config -xtype l -delete -print
-	find ~/.local/bin -xtype l -delete -print
+# Special target for rclone to run post-install after stowing
+stow_rclone:
+	@echo "Cleaning broken symlinks in ~/.config/rclone/..."
+	find ~/.config/rclone/ -xtype l -delete -print
+	@echo "Removing symlink ~/.local/bin/rclone_mount_check.sh if it exists..."
+	@if [ -L $$HOME/.local/bin/rclone_mount_check.sh ]; then rm $$HOME/.local/bin/rclone_mount_check.sh; fi
+	@echo "Stowing rclone"
+	stow -v -t $(HOME) rclone
+	@$(MAKE) post_install_rclone

btop/.config/btop/btop.conf

@@ -1,4 +1,4 @@
-#? Config file for btop v.1.4.7
+#? Config file for btop v.1.4.6
 
 #* Name of a btop++/bpytop/bashtop formatted ".theme" file, "Default" and "TTY" for builtin themes.
 #* Themes should be placed in "../share/btop/themes" relative to binary or "$HOME/.config/btop/themes"
@@ -14,11 +14,6 @@ truecolor = true
 #* Will force 16-color mode and TTY theme, set all graph symbols to "tty" and swap out other non tty friendly symbols.
 force_tty = false
 
-#* Option to disable presets. Either the default preset, custom presets, or all presets.
-#* "Off" All presets are enabled.
-#* "Default" preset is disabled.#* "Custom" presets are disabled.#* "All" presets are disabled.
-disable_presets = "Off"
-
 #* Define presets for the layout of the boxes. Preset 0 is always all boxes shown with default settings. Max 9 presets.
 #* Format: "box_name:P:G,box_name:P:G" P=(0 or 1) for alternate positions, G=graph symbol to use for box.
 #* Use whitespace " " as separator between different presets.
@@ -29,9 +24,6 @@ presets = "cpu:1:default,proc:0:default cpu:0:default,mem:0:default,net:0:defaul
 #* Conflicting keys for h:"help" and k:"kill" is accessible while holding shift.
 vim_keys = true
 
-#* Disable all mouse events.
-disable_mouse = false
-
 #* Rounded corners on boxes, is ignored if TTY mode is ON.
 rounded_corners = true
 
@@ -100,9 +92,6 @@ proc_left = false
 #* (Linux) Filter processes tied to the Linux kernel(similar behavior to htop).
 proc_filter_kernel = false
 
-#* Should the process list follow the selected process when detailed view is open.
-proc_follow_detailed = true
-
 #* In tree-view, always accumulate child process resources in the parent process.
 proc_aggregate = true
 
@@ -219,9 +208,6 @@ io_graph_combined = false
 #* Example: "/mnt/media:100 /:20 /boot:1".
 io_graph_speeds = ""
 
-#* Swap the positions of the upload and download speed graphs. When true, upload will be on top.
-swap_upload_download = false
-
 #* Set fixed values for network graphs in Mebibits. Is only used if net_auto is also set to False.
 net_download = 100
 
@@ -264,7 +250,7 @@ rsmi_measure_pcie_speeds = true
 #* Horizontally mirror the GPU graph.
 gpu_mirror_graph = true
 
-#* Set which GPU vendors to show. Available values are "nvidia amd intel apple"
+#* Set which GPU vendors to show. Available values are "nvidia amd intel"
 shown_gpus = "nvidia amd intel"
 
 #* Custom gpu0 model name, empty string to disable.

doom/.config/doom/.gitignore

@@ -1 +0,0 @@
-*.bak

doom/.config/doom/init.el

@@ -14,8 +14,6 @@
 ;;      Alternatively, press 'gd' (or 'C-c c d') on a module to browse its
 ;;      directory (for easy access to its source code).
 
-(setq +literate-config-file "~/.config/doom/README.org")
-
 (doom! :input
        ;;bidi              ; (tfel ot) thgir etirw uoy gnipleh
        ;;chinese
@@ -33,7 +31,7 @@
        :ui
        ;;deft              ; notational velocity for Emacs
        doom              ; what makes DOOM look the way it does
-       dashboard    ; a nifty splash screen for Emacs
+       doom-dashboard    ; a nifty splash screen for Emacs
        ;;doom-quit         ; DOOM quit-message prompts when you quit Emacs
        (emoji +unicode)  ; 🙂
        hl-todo           ; highlight TODO/FIXME/NOTE/DEPRECATED/HACK/REVIEW
@@ -70,7 +68,7 @@
        ;;word-wrap         ; soft wrapping with language-aware indent
 
        :emacs
-       (dired +dirvish +icons)             ; making dired pretty [functional]
+       (dired +dirvish + icons)             ; making dired pretty [functional]
        electric          ; smarter, keyword-based electric-indent
        eww               ; the internet is gross
 
@@ -165,7 +163,7 @@
         +pretty
         +journal
         +present
-        +roam
+        +roam2
         +pandoc
         +noter)
        ;;php               ; perl's insecure younger brother
@@ -203,11 +201,11 @@
 
        :app
        calendar
-       emms              ; Multimedia system
+       ;;emms              ; Multimedia system
        everywhere        ; *leave* Emacs!? You must be joking
        irc               ; how neckbeards socialize
-       (rss +org +youtube)        ; emacs as an RSS reader
+       ;;(rss +org)        ; emacs as an RSS reader
 
        :config
-       literate
+       ;;literate
        (default +bindings +smartparens))

doom/.config/doom/lisp/hermes-preview.el

@@ -1,297 +0,0 @@
-;;; hermes-preview.el --- Preview & apply Emacs Lisp edits with inline diff overlays -*- lexical-binding: t; -*-
-
-;; Copyright (C) 2026  Thierry Pouplier
-;; Version: 0.1
-
-;;; Commentary:
-;;
-;; Takes a list of Emacs Lisp command forms, executes each on a copy
-;; of the current buffer, diffs the result, and presents the diff as
-;; an inline overlay (green/red, +/- lines) on the original buffer.
-;;
-;; Each overlay has its own accept/reject commands — you can approve
-;; changes one by one.  On accept, the exact same command is replayed
-;; on the real buffer, ensuring org timestamps, LOGBOOK entries,
-;; properties drawers etc. are formatted correctly.
-
-;;; Code:
-
-(require 'cl-lib)
-
-(defvar hermes-preview-alist nil
-  "List of active preview entries.
-Each element is (COMMAND BUFFER OVERLAY STATUS) where
-  COMMAND  — the Emacs Lisp form to execute
-  BUFFER   — the temp buffer holding the result
-  OVERLAY  — the overlay on the real buffer
-  STATUS   — 'pending, 'accepted, or 'rejected")
-
-(defvar-keymap hermes-preview-actions-map
-  :doc "Keymap for hermes preview overlays."
-  "RET"      #'hermes-preview-dispatch
-  "C-c C-a"  #'hermes-preview-accept
-  "C-c C-k"  #'hermes-preview-reject
-  "C-c C-d"  #'hermes-preview-diff
-  "C-c C-n"  #'hermes-preview-next
-  "C-c C-p"  #'hermes-preview-previous)
-
-(defface hermes-preview-removed
-  '((t (:inherit diff-removed)))
-  "Face for removed lines in the preview overlay."
-  :group 'hermes-preview)
-
-(defface hermes-preview-added
-  '((t (:inherit diff-added)))
-  "Face for added lines in the preview overlay."
-  :group 'hermes-preview)
-
-;;;###autoload
-(defun hermes-preview-start (commands &optional file)
-  "Execute COMMANDS (list of Emacs Lisp forms) as previews on FILE.
-Each command is run on a temp copy, diffed, and an inline overlay
-is placed on the real buffer showing the +/- diff in green/red.
-You can then accept or reject each overlay individually."
-  (interactive)
-  (let ((file (or file (buffer-file-name))))
-    (unless file
-      (user-error "Buffer is not visiting a file"))
-    (unless (listp commands)
-      (user-error "COMMANDS must be a list of Emacs Lisp forms"))
-    (dolist (cmd commands)
-      (hermes-preview--process-one cmd file))
-    (hermes-preview--status-message)))
-
-(defun hermes-preview--process-one (cmd file)
-  "Preview a single COMMAND on FILE, creating an overlay."
-  (let* ((orig-buf (current-buffer))
-         (temp-buf (generate-new-buffer (format " *hermes-preview-%d*"
-                                                 (length hermes-preview-alist))))
-         (cmd-str (prin1-to-string cmd))
-         (ov nil))
-    ;; Copy file content to temp buffer
-    (with-current-buffer temp-buf
-      (insert-file-contents file)
-      (delay-mode-hooks (funcall major-mode))
-      (goto-char (point-min)))
-    ;; Execute command on temp buffer
-    (condition-case err
-        (with-current-buffer temp-buf
-          (eval cmd t))
-      (error
-       (kill-buffer temp-buf)
-       (display-warning '(hermes-preview)
-                        (format "Command failed: %s\n  %s" cmd-str err))
-       (cl-return-from hermes-preview--process-one nil)))
-    ;; Diff original vs temp
-    (let* ((diff-buf (get-buffer-create " *hermes-preview-diff*"))
-           (patch-text
-            (with-current-buffer diff-buf
-              (erase-buffer)
-              (save-excursion
-                (insert (shell-command-to-string
-                         (format "diff -u \"%s\" /dev/stdin <<< \"%s\""
-                                 file
-                                 (shell-quote-argument
-                                  (with-current-buffer temp-buf
-                                    (buffer-string)))))))
-              (buffer-string))))
-      ;; Actually we need a proper diff between two buffers
-      ;; Let's use Emacs's diff-no-select
-      (let ((diff-buf (diff-no-select orig-buf temp-buf nil t)))
-        (with-current-buffer diff-buf
-          ;; Parse the hunks
-          (goto-char (point-min))
-          ;; Find the first hunk
-          (when (re-search-forward "^@@ -\\([0-9]+\\),\\([0-9]*\\) \\+\\([0-9]+\\),\\([0-9]*\\) @@" nil t)
-            (let* ((orig-line (string-to-number (match-string 1)))
-                   (orig-count (string-to-number (or (match-string 2) "1")))
-                   (new-line (string-to-number (match-string 3)))
-                   (new-count (string-to-number (or (match-string 4) "1")))
-                   (ov-end (save-excursion
-                             (goto-char (point-min))
-                             (forward-line (1- orig-line))
-                             (if (zerop orig-count)
-                                 (point)
-                               (forward-line orig-count)
-                               (point))))
-                   ;; Build the diff display string
-                   (diff-lines (hermes-preview--parse-hunk diff-buf))
-                   (display-str (hermes-preview--diff-to-string diff-lines)))
-              ;; Create overlay on the real buffer
-              (with-current-buffer orig-buf
-                (save-excursion
-                  (goto-char (point-min))
-                  (forward-line (1- orig-line))
-                  (setq ov (make-overlay (point)
-                                         (if (zerop orig-count)
-                                             (point)
-                                           (progn (forward-line orig-count)
-                                                  (point)))
-                                         nil t nil)))
-                ;; If 0 lines removed, overlay at insertion point
-                (when (and (zerop orig-count) (not (zerop new-count)))
-                  (move-overlay ov (1- (point)) (point)))
-                ;; Store data in overlay
-                (overlay-put ov 'hermes-preview t)
-                (overlay-put ov 'hermes-preview-cmd cmd)
-                (overlay-put ov 'hermes-preview-temp-buf temp-buf)
-                (overlay-put ov 'hermes-preview-diff-str display-str)
-                (overlay-put ov 'hermes-preview-status 'pending)
-                ;; Face: grey out original text
-                (overlay-put ov 'face '(:inherit shadow :strike-through t))
-                ;; Display the diff inline
-                (overlay-put ov 'after-string
-                             (propertize (concat "\n" display-str "\n")
-                                         'face '(:inherit default)))
-                ;; Keymap
-                (overlay-put ov 'keymap hermes-preview-actions-map)
-                ;; Add to alist
-                (push (list cmd temp-buf ov 'pending) hermes-preview-alist)))))))))
-
-(defun hermes-preview--parse-hunk (diff-buf)
-  "Parse diff hunks in DIFF-BUF into a list of (type . text) entries.
-TYPE is 'context, 'removed, or 'added."
-  (let ((lines))
-    (with-current-buffer diff-buf
-      (goto-char (point-min))
-      (while (not (eobp))
-        (let ((line (buffer-substring-no-properties
-                     (point) (min (1+ (line-end-position)) (point-max)))))
-          (cond ((string-match-p "^[-+][^-+]" line)
-                 (push (cons (if (eq (aref line 0) ?-) 'removed 'added)
-                             (substring line 1))
-                       lines))
-                ((string-match-p "^[ ]" line)
-                 (push (cons 'context (substring line 1)) lines))
-                ;; skip header lines
-                (t nil)))
-        (forward-line 1)))
-    (nreverse lines)))
-
-(defun hermes-preview--diff-to-string (lines)
-  "Convert LINES (from `hermes-preview--parse-hunk') to a propertized string."
-  (mapconcat
-   (lambda (entry)
-     (pcase (car entry)
-       ('removed (propertize (concat "- " (cdr entry)) 'face 'hermes-preview-removed))
-       ('added   (propertize (concat "+ " (cdr entry)) 'face 'hermes-preview-added))
-       ('context (propertize (concat "  " (cdr entry)) 'face '(:inherit shadow)))))
-   lines "\n"))
-
-(defun hermes-preview--status-message ()
-  "Show how many pending previews there are."
-  (let ((pending (cl-count-if (lambda (e) (eq (nth 3 e) 'pending)) hermes-preview-alist)))
-    (message "%d preview(s) pending — RET to act, C-c C-n/p to navigate"
-             pending)))
-
-;;; Actions
-
-(defun hermes-preview-overlay-at (&optional pt)
-  "Get the hermes-preview overlay at PT (or point)."
-  (let ((ov (car-safe (get-char-property-and-overlay
-                       (or pt (point)) 'hermes-preview))))
-    (unless ov (user-error "No preview overlay at point"))
-    ov))
-
-(defun hermes-preview--entry-for-overlay (ov)
-  "Find the preview entry for overlay OV."
-  (cl-find-if (lambda (e) (eq (nth 2 e) ov)) hermes-preview-alist))
-
-(defun hermes-preview-accept (ov)
-  "Accept the preview at OV — replay command on the real file."
-  (interactive (list (hermes-preview-overlay-at)))
-  (when-let ((entry (hermes-preview--entry-for-overlay ov)))
-    (let ((cmd (nth 0 entry))
-          (temp-buf (nth 1 entry)))
-      ;; Replay the exact command on the real buffer
-      (condition-case err
-          (eval cmd t)
-        (error (user-error "Accept failed: %s" err)))
-      ;; Clean up overlay
-      (hermes-preview--cleanup ov)
-      (setf (nth 3 entry) 'accepted)
-      ;; Also delete the temp buffer if 0 refs remain
-      (hermes-preview--maybe-kill-temp temp-buf)
-      (message "Preview accepted."))))
-
-(defun hermes-preview-reject (ov)
-  "Reject the preview at OV — discard change."
-  (interactive (list (hermes-preview-overlay-at)))
-  (when-let ((entry (hermes-preview--entry-for-overlay ov)))
-    (let ((temp-buf (nth 1 entry)))
-      (hermes-preview--cleanup ov)
-      (setf (nth 3 entry) 'rejected)
-      (hermes-preview--maybe-kill-temp temp-buf)
-      (message "Preview rejected."))))
-
-(defun hermes-preview-dispatch (ov)
-  "Dispatch menu for a preview overlay."
-  (interactive (list (hermes-preview-overlay-at)))
-  (let ((action (read-char-choice
-                 (concat "Action: [a]ccept, [r]eject, [d]iff, [q]uit? ")
-                 '(?a ?r ?d ?q))))
-    (pcase action
-      (?a (hermes-preview-accept ov))
-      (?r (hermes-preview-reject ov))
-      (?d (hermes-preview-show-diff ov))
-      (?q nil))))
-
-(defun hermes-preview-show-diff (ov)
-  "Show a proper unified diff buffer for OV."
-  (interactive (list (hermes-preview-overlay-at)))
-  (when-let ((entry (hermes-preview--entry-for-overlay ov)))
-    (let* ((orig-buf (current-buffer))
-           (temp-buf (nth 1 entry))
-           (diff-buf (get-buffer-create "*hermes-preview-full-diff*")))
-      (with-current-buffer diff-buf
-        (erase-buffer)
-        (diff-no-select orig-buf temp-buf nil nil diff-buf)
-        (diff-mode))
-      (display-buffer diff-buf))))
-
-(defun hermes-preview-next ()
-  "Move to the next pending preview."
-  (interactive)
-  (let ((pt (next-single-char-property-change (point) 'hermes-preview)))
-    (if (get-char-property pt 'hermes-preview)
-        (goto-char pt)
-      (user-error "No next preview"))))
-
-(defun hermes-preview-previous ()
-  "Move to the previous pending preview."
-  (interactive)
-  (let ((pt (previous-single-char-property-change (point) 'hermes-preview)))
-    (if (get-char-property (max (1- pt) (point-min)) 'hermes-preview)
-        (goto-char (max (1- pt) (point-min)))
-      (user-error "No previous preview"))))
-
-;;; Cleanup
-
-(defun hermes-preview--cleanup (ov)
-  "Remove overlay OV and any display artifacts."
-  (overlay-put ov 'after-string nil)
-  (overlay-put ov 'face nil)
-  (overlay-put ov 'hermes-preview nil)
-  (delete-overlay ov))
-
-(defun hermes-preview--maybe-kill-temp (buf)
-  "Kill temp BUF if no other entry references it."
-  (when (buffer-live-p buf)
-    (unless (cl-find-if (lambda (e)
-                          (and (eq (nth 3 e) 'pending)
-                               (eq (nth 1 e) buf)))
-                        hermes-preview-alist)
-      (kill-buffer buf))))
-
-(defun hermes-preview-clear-all ()
-  "Reject all pending previews and clean up."
-  (interactive)
-  (dolist (entry hermes-preview-alist)
-    (when (eq (nth 3 entry) 'pending)
-      (hermes-preview--cleanup (nth 2 entry))
-      (hermes-preview--maybe-kill-temp (nth 1 entry))
-      (setf (nth 3 entry) 'rejected)))
-  (message "All previews cleared."))
-
-(provide 'hermes-preview)
-;;; hermes-preview.el ends here

doom/.config/doom/packages.el

@@ -7,16 +7,6 @@
 ;; To install SOME-PACKAGE from MELPA, ELPA or emacsmirror:
 ;; (package! some-package)
 
-;; Emacs = kirby
-;; (package! emacs-application-framework
-;;   :recipe (:host github
-;;            :repo "emacs-eaf/emacs-application-framework"
-;;            :files ("*")
-;;            ;; Automatically pull the browser and video-player modules during doom sync
-;;            :post-build (shell-command "python3 install-eaf.py --install browser video-player")))
-(package! emskin
-  :recipe (:host github :repo "emskin/emskin"))
-
 ;; pywal for emacs
 (package! ewal)
 
@@ -26,30 +16,6 @@
 ;; Pointer highlight
 (package! beacon)
 
-;; Centered view
-(package! olivetti)
-
-;; The real gruvbox
-(package! gruvbox-theme)
-
-;; token theme
-(package! token-theme
-  :recipe (:host github :repo "ThorstenRhau/token" 
-           :protocol ssh
-           :files ("contrib/emacs/*.el")))
-
-;; vscode theme
-(package! vscode-dark-plus-theme)
-
-;; tomorrow theme
-(package! color-theme-sanityinc-tomorrow)
-
-;; Prot themes
-(package! ef-themes)
-
-;; Colored parenthesis
-(package! rainbow-delimiters)
-
 ;; Weather in the agenda
 ;; (package! weather-metno) ;; Not working.. :(
 
@@ -169,13 +135,11 @@
 (package! passage
   :recipe (:host github :repo "anticomputer/passage.el" :protocol ssh))
 
+;; Server is down, deactivated for now
 ;; (package! krl-mode
 ;;   :recipe (:host nil
 ;;            :repo "ssh://code.lazyworkhorse.net:2222/gortium/krl-mode.git"
 ;;            :files ("*.el")))
-(package! krl-mode
-  :recipe (:local-repo "/home/tpouplier/ExoKortex/3-Resources/krl-mode"
-           :files ("*.el")))
 
 (package! auto-highlight-symbol)
 
@@ -224,6 +188,3 @@
 ;; (unpin! pinned-package another-pinned-package)
 ;; ...Or *all* packages (NOT RECOMMENDED; will likely break things)
 ;; (unpin! t)
-
-;; Transmission BitTorrent client interface
-(package! transmission)

exokortex/.config/systemd/user/exokortex_auto_commit.service

@@ -1,10 +0,0 @@
-[Unit]
-Description=Automated ExoKortex PARA Node Git Sweep
-Documentation=https://github.com/gortium
-
-[Service]
-Type=oneshot
-ExecStart=%h/.local/bin/exokortex_auto_commit.sh
-
-[Install]
-WantedBy=default.target

exokortex/.config/systemd/user/exokortex_auto_commit.timer

@@ -1,9 +0,0 @@
-[Unit]
-Description=Run Automated ExoKortex Sweep Hourly
-
-[Timer]
-OnCalendar=hourly
-Persistent=true
-
-[Install]
-WantedBy=timers.target

exokortex/.local/bin/exokortex_auto_commit.sh

@@ -1,37 +0,0 @@
-#!/usr/bin/env bash
-
-# ==============================================================================
-# PARA TARGET CONTROLS
-# Comment out (#) any directory to completely deactivate it from the sweep.
-# ==============================================================================
-TARGETS=(
-    "$HOME/ExoKortex/1-Projects"
-    "$HOME/ExoKortex/2-Areas"
-    # "$HOME/ExoKortex/3-Resources"
-    # "$HOME/ExoKortex/4-Archives/"
-)
-
-# Protect against empty arrays if all targets get disabled
-if [ ${#TARGETS[@]} -eq 0 ]; then
-    echo "Drop execution: No active PARA targets configured."
-    exit 0
-fi
-
-# Root ExoKortex repo (root-level org files only; see ~/ExoKortex/.gitignore)
-if git -C "$HOME/ExoKortex" rev-parse --is-inside-work-tree >/dev/null 2>&1; then
-    if [ -n "$(git -C "$HOME/ExoKortex" status --porcelain)" ]; then
-        git -C "$HOME/ExoKortex" add -A
-        git -C "$HOME/ExoKortex" commit -m "System: Automated background sweep $(date +'%Y-%m-%d %H:%M')"
-    fi
-fi
-
-# Execute strict structural scanning on active paths only
-find "${TARGETS[@]}" -mindepth 2 -maxdepth 2 -type d -name ".git" | while read -r gitdir; do
-    repo_dir=$(dirname "$gitdir")
-    cd "$repo_dir"
-    
-    if [ -n "$(git status --porcelain)" ]; then
-        git add .
-        git commit -m "System: Automated background sweep $(date +'%Y-%m-%d %H:%M')"
-    fi
-done

hypr/.config/hypr/hyprland.conf

@@ -8,7 +8,6 @@
 # You can split this configuration into multiple files
 # Create your files separately and then link them to this file like this:
 # source = ~/.config/hypr/myColors.conf
-source = mocha.conf
 source = ~/.cache/wal/colors-hyprland.conf
 
 ################
@@ -24,32 +23,22 @@ $EXTERNAL_R2=DP-7
 # See https://wiki.hyprland.org/Configuring/Monitors/
 # Useful command: 
 # hyprctl monitors all
- 
 ## Valkyrie setup
 # monitor=eDP-1,highres,auto,2 #3200x1800,0x0,2
 # monitor=HDMI-A-2,2560x1600,auto,1 #1600x0,1  #x-370,1,transform,1
- 
 ## Ingenuity setup
 monitor=$LAPTOP, 1920x1080, 0x0, 1
 monitor=DP-3, 1920x1080, 1920x0, 1        # HDMI screen
-
 # Horizontal setup
 #monitor=DP-4,1920x1080,-960x-1080,1    # Left screen
 #monitor=DP-6,1920x1080,-960x-1080,1    # Left screen
 #monitor=DP-5,1920x1080,960x-1080,1     # Right screen
 #monitor=DP-7,1920x1080,960x-1080,1     # Right screen
-
 # Vertical setup
-# monitor=$EXTERNAL_L1, 1920x1080, 0x-1080, 1, transform, 0        # Left screen
-# monitor=$EXTERNAL_L2, 1920x1080,0x-1080,1,transform,0        # Left screen
-# monitor=$EXTERNAL_R1, 1920x1080, 1920x-1480, 1, transform, 1     # Right screen
-# monitor=$EXTERNAL_R2, 1920x1080,1920x-1480,1,transform,1     # Right screen
-
-# Double Vertical setup
-monitor=$EXTERNAL_L1, 1920x1080, -1080x-1480, 1, transform, 3        # Left screen
-monitor=$EXTERNAL_L2, 1920x1080, -1080x-1480, 1, transform, 3        # Left screen
+monitor=$EXTERNAL_L1, 1920x1080, 0x-1080, 1, transform, 0        # Left screen
+monitor=$EXTERNAL_L2, 1920x1080,0x-1080,1,transform,0        # Left screen
 monitor=$EXTERNAL_R1, 1920x1080, 1920x-1480, 1, transform, 1     # Right screen
-monitor=$EXTERNAL_R2, 1920x1080, 1920x-1480, 1, transform, 1     # Right screen
+monitor=$EXTERNAL_R2, 1920x1080,1920x-1480,1,transform,1     # Right screen
 
 ###################
 ### MY PROGRAMS ###
@@ -74,17 +63,20 @@ $monitoring = kitty btop
 
 # exec-once = $terminal
 # exec-once = nm-applet &
-exec-once = dbus-update-activation-environment --systemd WAYLAND_DISPLAY XDG_CURRENT_DESKTOP HYPRLAND_INSTANCE_SIGNATURE
 exec = hyprshade auto
 exec-once = udiskie
 exec-once = waybar
+exec-once = swww-daemon
+exec-once = swww img ~/.config/wallpapers/green_yellow_forest.jpg --outputs $LAPTOP
+exec-once = swww img ~/.config/wallpapers/green_yellow_forest.jpg --outputs $EXTERNAL_L1
+exec-once = swww img ~/.config/wallpapers/green_yellow_forest.jpg --outputs $EXTERNAL_L2
+exec-once = swww img ~/.config/wallpapers/buck_head.jpg --outputs $EXTERNAL_R1
+exec-once = swww img ~/.config/wallpapers/buck_head.jpg --outputs $EXTERNAL_R2
 exec-once = swaync
 exec-once = hypridle
 exec-once = hyprlock
 exec-once = /usr/bin/emacs --daemon
-exec-once = swww-daemon
-exec-once = sleep 1 && swww img ~/.config/wallpapers/green_yellow_forest.jpg --outputs $LAPTOP,$EXTERNAL_L1,$EXTERNAL_L2
-exec-once = sleep 1 && swww img ~/.config/wallpapers/buck_head.jpg --outputs $EXTERNAL_R1,$EXTERNAL_R2
+exec-once = dbus-update-activation-environment --systemd HYPRLAND_INSTANCE_SIGNATURE
 
 #############################
 ### ENVIRONMENT VARIABLES ###
@@ -155,8 +147,7 @@ animations {
 
 # See https://wiki.hyprland.org/Configuring/Dwindle-Layout/ for more
 dwindle {
-    # Note: pseudotile variable removed in 0.55+. Use `pseudo` dispatcher to toggle per-window.
-    # Bound to $mainMod + P below.
+    pseudotile = true # Master switch for pseudotiling. Enabling is bound to mainMod + P in the keybinds section below
 
     # This prevents the layout from collapsing if you close one window
     preserve_split = true # You probably want this
@@ -217,28 +208,25 @@ device {
 
 # See https://wiki.hyprland.org/Configuring/Keywords/
 $mainMod = SUPER # Sets "Windows" key as main modifier
-$dotfiles = ~/ExoKortex/2-Areas/Home-Infra/4-Outputs/dotfiles
 
 # Example binds, see https://wiki.hyprland.org/Configuring/Binds/ for more
 bind = $mainMod, T, exec, $terminal
 bind = $mainMod, D, killactive,
 bind = $mainMod SHIFT, Q, exit,
-bind = $mainMod, U, exec, $dotfiles/scripts/make_all.sh && swww img ~/.config/wallpapers/green_yellow_forest.jpg --outputs $LAPTOP,$EXTERNAL_L1,$EXTERNAL_L2 && swww img ~/.config/wallpapers/buck_head.jpg --outputs $EXTERNAL_R1,$EXTERNAL_R2
+bind = $mainMod, U, exec, ~/ExoKortex/4-Automata/dotfiles/scripts/make_all.sh
 bind = $mainMod, M, exec, $monitoring
 bind = $mainMod, E, exec, $editor
 bind = $mainMod, V, togglefloating,
 bind = $mainMod, R, exec, $menu
 bind = $mainMod, Z, exec, $zen
-# togglesplit removed as standalone dispatcher in 0.55+; use `layoutmsg togglesplit` instead
-bind = $mainMod, P, pseudo, # dwindle
+#bind = $mainMod, P, pseudo, # dwindle
+bind = $mainMod, P, togglesplit, # dwindle
 bind = $mainMod, N, movecurrentworkspacetomonitor, -1
 bind = $mainMod SHIFT, N, movecurrentworkspacetomonitor, +1
 bind = $mainMod, X, swapwindow
-bind = $mainMod, B, exec, python $dotfiles/recordntrans/record_transcribe.py
-bind = $mainMod, i, exec, $dotfiles/scripts/scrot-ocr.sh
+bind = $mainMod, B, exec, python /home/tpouplier/ExoKortex/4-Automata/recordntrans/record_transcribe.py
 # bind = $mainMod, G, exec, nerd-dictation end
 bind = $mainMod, A, exec, $music
-bind = $mainMod, C, exec, emacsclient -n -c -e '(gortium/hermes-vterm)'
 
 # Full screen
 bind = SUPER, F, fullscreen 

hypr/.config/hypr/hyprlock.conf

@@ -1,7 +1,7 @@
 source = $HOME/.cache/wal/colors-hyprland.conf
 
 general {
-#    ignore_empty_input = true
+    ignore_empty_input = true
 }
 
 background {

hypr/.config/hypr/mocha.conf

@@ -76,11 +76,3 @@ $mantleAlpha = 181825
 
 $crust = rgb(11111b)
 $crustAlpha = 11111b
-
-# Fallback colors for when pywal hasn't generated colors-hyprland.conf
-# (sourced by hyprland.conf — $color1/$color2 for active border gradients,
-#  $background for inactive border and general bg usage)
-$color1 = rgb(cba6f7)
-$color2 = rgb(f5c2e7)
-$color3 = rgb(89b4fa)
-$background = rgb(1e1e2e)

local/.local/share/applications/qet-xephyr.desktop

@@ -1,8 +0,0 @@
-[Desktop Entry]
-Name=QET (Xephyr)
-Comment=QElectroTech in nested X server for Wayland compatibility
-Exec=/home/tpouplier/ExoKortex/4-Automata/dotfiles/scripts/qet-xephyr.sh
-Icon=qelectrotech
-Type=Application
-Categories=Graphics;Engineering;
-Terminal=false

rclone/.config/systemd/user/rclone_ftp_mount.service

@@ -2,26 +2,14 @@
 Description=Mount Rclone FTP
 After=network-online.target network.target
 Wants=network-online.target
-StartLimitIntervalSec=0
 
 [Service]
 Type=simple
+# Use Environment to explicitly set $HOME
 Environment=HOME=%h
-RestartSec=60
 ExecStartPre=%h/.local/bin/rclone_mount_check.sh
-ExecStartPre=-/bin/fusermount -uz %h/mnt/tdnde_server
-ExecStart=/usr/bin/rclone mount tdnde_ftp: %h/mnt/tdnde_server \
-  --vfs-cache-mode full \
-  --vfs-cache-max-size 4G \
-  --vfs-read-chunk-size 4M \
-  --vfs-read-chunk-size-limit 128M \
-  --buffer-size 32M \
-  --ftp-concurrency 20 \
-  --timeout 300s \
-  --contimeout 60s \
-  --dir-cache-time 1h
-ExecStop=/bin/fusermount -uz %h/mnt/tdnde_server
-ExecStopPost=/bin/fusermount -uz %h/mnt/tdnde_server
+ExecStart=/usr/bin/rclone mount tdnde_ftp: %h/mnt/tdnde_server --vfs-cache-mode full --vfs-cache-max-size 1G --ftp-concurrency 20 --timeout 60s --contimeout 30s --dir-cache-time 1h
+ExecStop=/bin/fusermount -u %h/mnt/tdnde_server
 Restart=on-failure
 
 [Install]

scripts/exokortex_post_install.sh

@@ -1,39 +0,0 @@
-#!/bin/bash
-
-# Define paths
-SWEEP_SCRIPT="$HOME/.local/bin/exokortex_auto_commit.sh"
-TIMER_FILE="$HOME/.config/systemd/user/exokortex_auto_commit.timer"
-
-# Ensure the sweeper script is executable
-if [ -f "$SWEEP_SCRIPT" ] && [ ! -x "$SWEEP_SCRIPT" ]; then
-    echo "Making the exokortex sweep script executable: $SWEEP_SCRIPT"
-    chmod +x "$SWEEP_SCRIPT" || { echo "Failed to make the script executable"; exit 1; }
-else
-    echo "Sweep script already executable or doesn't exist yet."
-fi
-
-# Reload user systemd to recognize the new units
-systemctl --user daemon-reload
-
-# Enable and start the timer if the configuration file is in place
-if [ -f "$TIMER_FILE" ]; then
-    if ! systemctl --user is-enabled --quiet exokortex_auto_commit.timer; then
-        echo "Enabling the exokortex_auto_commit timer."
-        systemctl --user enable exokortex_auto_commit.timer || { echo "Failed to enable the timer"; exit 1; }
-    else
-        echo "Exokortex timer already enabled."
-    fi
-else
-    echo "Timer file does not exist at $TIMER_FILE."
-    exit 1
-fi
-
-# Start the timer if it is not currently ticking
-if systemctl --user is-active --quiet exokortex_auto_commit.timer; then
-    echo "exokortex_auto_commit timer is already running."
-else
-    echo "Starting the exokortex_auto_commit timer."
-    systemctl --user start exokortex_auto_commit.timer || echo "Warning: ExoKortex timer failed to start, skipping..."
-fi
-
-echo "Post-installation steps for exokortex completed."

scripts/make_all.sh

@@ -1,5 +1,5 @@
 #!/bin/bash
-cd ~/ExoKortex/2-Areas/Home-Infra/4-Outputs/dotfiles
+cd ~/ExoKortex/4-Automata/dotfiles/
 make all
 if [ $? -eq 0 ]; then
     notify-send "Dotfiles" "Configuration reloaded successfully!"

scripts/qet-xephyr.sh

@@ -1,21 +0,0 @@
-#!/bin/bash
-# Launch QElectroTech in a nested Xephyr X server with Openbox
-# Works around Wayland drag-and-drop issue in QET
-
-XEPHYR_PID=""
-
-cleanup() {
-    kill $XEPHYR_PID 2>/dev/null
-    exit 0
-}
-trap cleanup SIGINT SIGTERM
-
-Xephyr -screen 1920x1080 :1 -title QET -br &
-XEPHYR_PID=$!
-
-sleep 1
-DISPLAY=:1 openbox &
-sleep 0.5
-DISPLAY=:1 qelectrotech &
-
-wait $XEPHYR_PID

scripts/rclone_post_install.sh

@@ -33,7 +33,7 @@ if systemctl --user is-active --quiet rclone_ftp_mount.service; then
     echo "Rclone service is already running."
 else
     echo "Starting the rclone service."
-    systemctl --user start rclone_ftp_mount.service || echo "Warning: Rclone service failed to start, skipping..."
+    systemctl --user start rclone_ftp_mount.service || { echo "Failed to start the service"; exit 1; }
 fi
 
-echo "Post-installation steps for rclone completed."
+echo "Post-installation steps for rclone completed successfully."

scripts/scrot-ocr.sh

@@ -1,16 +0,0 @@
-#!/bin/bash
-scrot-ocr: Select screen region → OCR → clipboard
-Deps: grim, slurp, tesseract, wl-clipboard, libnotify
-set -euo pipefail
-
-LANG="${1:-eng}"
-IMG="/tmp/scrot-ocr-$(date +%s).png"
-
-grim -g "$(slurp -d)" "$IMG"
-TEXT=$(tesseract "$IMG" stdout -l "$LANG" 2>/dev/null | sed '/^[[:space:]]*$/d')
-
-echo -n "$TEXT" | wl-copy --paste-once
-echo "$TEXT"
-
-notify-send "scrot-ocr" "$(echo "$TEXT" | wc -l) lines copied to clipboard" -t 3000
-rm -f "$IMG"

yazi/.config/yazi/yazi.toml

@@ -1,5 +1,6 @@
 # A TOML linter such as https://taplo.tamasfe.dev/ can use this schema to validate your config.
 # If you encounter any issues, please make an issue at https://github.com/yazi-rs/schemas.
+"$schema" = "https://yazi-rs.github.io/schemas/yazi.json"
 
 [mgr]
 ratio          = [ 1, 4, 3 ]
@@ -60,7 +61,7 @@ play = [
 [open]
 rules = [
 	# Folder
-	{ url = "*/", use = [ "edit", "open", "reveal" ] },
+	{ name = "*/", use = [ "edit", "open", "reveal" ] },
 	# Text
 	{ mime = "text/*", use = [ "edit", "reveal" ] },
 	# Image
@@ -75,7 +76,7 @@ rules = [
 	# Empty file
 	{ mime = "inode/empty", use = [ "edit", "reveal" ] },
 	# Fallback
-	{ url = "*", use = [ "open", "reveal" ] },
+	{ name = "*", use = [ "open", "reveal" ] },
 ]
 
 [tasks]

zsh/.zshrc

@@ -19,43 +19,6 @@ alias emacs="emacsclient -c -a emacs"
 # Opencode
 alias oc="opencode"
 
-# Hermes Agent - SSH directly to remote server
-hermes-rmt() {
-  if [[ -n "$1" ]]; then
-    ssh -t lazyworkhorse \
-      "docker exec -e HERMES_HONCHO_PEER_NAME=$1 -it hermes \
-      /opt/hermes/.venv/bin/hermes --profile $1"
-  else
-    ssh -t lazyworkhorse \
-      "docker exec -e HERMES_HONCHO_PEER_NAME=thierry -it hermes \
-      /opt/hermes/.venv/bin/hermes"
-  fi
-}
-
-hermes-rmt-cp() { 
-  if [ $# -eq 0 ]; then
-    echo "Usage: hermes-cp <file_or_directory> [...]"
-    echo ""
-    echo "Copies files/directories from your Arch laptop into the Hermes"
-    echo "agent container at /opt/data/home/ preserving directory structure."
-    echo ""
-    echo "Examples:"
-    echo "  hermes-cp document.pdf              # single file"
-    echo "  hermes-cp *.pdf                      # multiple files (glob)"
-    echo "  hermes-cp manuals/                   # whole directory"
-    echo "  hermes-cp manuals/ keyence-docs/     # multiple items"
-    echo ""
-    echo "To copy to a different destination inside the container:"
-    echo "  tar -czf - . | ssh gortium@lazyworkhorse \\"
-    echo "    \"docker exec -i hermes sh -c 'cd /opt/data/projects && tar -xzf -'\""
-    return 1
-  fi
-  # tar everything into a single SSH pipe, extract inside container
-  # Supports: single files, directories, glob patterns, mixed args
-  tar -czf - "$@" | ssh gortium@lazyworkhorse \
-    "docker exec -i hermes sh -c 'cd /opt/data/home && tar -xzf -'"
-}
-
 # Yazi
 alias y="yazi"
 function yy() {
@@ -67,9 +30,6 @@ function yy() {
     rm -f -- "$tmp"
 }
 
-# dua
-alias dua="dua i"
-
 # Nvim
 export LANG=en_CA.UTF-8
 export LC_ALL=en_CA.UTF-8
@@ -79,7 +39,7 @@ export EDITOR="nvim"
 source <(fzf --zsh)
 
 # Capitalization fixing in tab completion
-autoload -Uz compinit && compinit -u
+autoload -Uz compinit && compinit
 zstyle ':completion:*' matcher-list 'm:{a-zA-Z}={A-Za-z}'
 
 # Bat
@@ -168,6 +128,3 @@ export HYPRSHOT_DIR="Images"
 
 # Created by `pipx` on 2026-03-03 16:51:31
 export PATH="$PATH:/home/tpouplier/.local/bin"
-
-# autosuggestions
-source /usr/share/zsh/plugins/zsh-autosuggestions/zsh-autosuggestions.zsh